Package: relater 0.0.0.9000
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relater: What the Package Does (One Line, Title Case)
What the package does (one paragraph).
Authors:
relater_0.0.0.9000.tar.gz
relater_0.0.0.9000.zip(r-4.5)relater_0.0.0.9000.zip(r-4.4)relater_0.0.0.9000.zip(r-4.3)
relater_0.0.0.9000.tgz(r-4.4-x86_64)relater_0.0.0.9000.tgz(r-4.4-arm64)relater_0.0.0.9000.tgz(r-4.3-x86_64)relater_0.0.0.9000.tgz(r-4.3-arm64)
relater_0.0.0.9000.tar.gz(r-4.5-noble)relater_0.0.0.9000.tar.gz(r-4.4-noble)
relater_0.0.0.9000.tgz(r-4.4-emscripten)relater_0.0.0.9000.tgz(r-4.3-emscripten)
relater.pdf |relater.html✨
relater/json (API)
| # Install 'relater' in R: |
| install.packages('relater', repos = c('https://leospeidel.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/leospeidel/relater/issues
Last updated 3 years agofrom:a9568a0868. Checks:OK: 1 WARNING: 8. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Aug 23 2024 |
| R-4.5-win-x86_64 | WARNING | Aug 23 2024 |
| R-4.5-linux-x86_64 | WARNING | Aug 23 2024 |
| R-4.4-win-x86_64 | WARNING | Aug 23 2024 |
| R-4.4-mac-x86_64 | WARNING | Aug 23 2024 |
| R-4.4-mac-aarch64 | WARNING | Aug 23 2024 |
| R-4.3-win-x86_64 | WARNING | Aug 23 2024 |
| R-4.3-mac-x86_64 | WARNING | Aug 23 2024 |
| R-4.3-mac-aarch64 | WARNING | Aug 23 2024 |
Exports:filter.allele_agesget_hap_matrixget.allele_agesPolyTestPolyTest_InitPolyTest_ResampleSNPsread.avg_rateread.coalread.freqread.hapsread.linread.mutread.qualread.sampleread.seletimesTwo
Dependencies:clidata.tablegluelifecyclemagrittrplyrR.methodsS3R.ooR.utilsRcppreshape2rlangstringistringrvctrs
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Filter allele_ages by quality of tree | filter.allele_ages |
| Get haplotype matrix (L x N) | get_hap_matrix |
| Compile allele ages file | get.allele_ages |
| Test for evidence of polygenic selection | PolyTest |
| Initialise polygenic selection test | PolyTest_Init |
| Resample selection p-values | PolyTest_ResampleSNPs |
| Parse average rate file | read.avg_rate |
| Parse coal file | read.coal |
| Parse freq file | read.freq |
| Parse haps file | read.haps |
| Parse lin file | read.lin |
| Parse mut file | read.mut |
| Parse qual file | read.qual |
| Parse sample file | read.sample |
| Parse sele file | read.sele |
| relater | relater-package relater |
| Multiply a number by two | timesTwo |