Package: relater 0.0.0.9000

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relater: What the Package Does (One Line, Title Case)
What the package does (one paragraph).
Authors:
relater_0.0.0.9000.tar.gz
relater_0.0.0.9000.zip(r-4.7)relater_0.0.0.9000.zip(r-4.6)relater_0.0.0.9000.zip(r-4.5)
relater_0.0.0.9000.tgz(r-4.6-x86_64)relater_0.0.0.9000.tgz(r-4.6-arm64)relater_0.0.0.9000.tgz(r-4.5-x86_64)relater_0.0.0.9000.tgz(r-4.5-arm64)
relater_0.0.0.9000.tar.gz(r-4.7-arm64)relater_0.0.0.9000.tar.gz(r-4.7-x86_64)relater_0.0.0.9000.tar.gz(r-4.6-arm64)relater_0.0.0.9000.tar.gz(r-4.6-x86_64)
relater_0.0.0.9000.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
relater/json (API)
| # Install 'relater' in R: |
| install.packages('relater', repos = c('https://leospeidel.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/leospeidel/relater/issues
Last updated from:a9568a0868. Checks:11 WARNING, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-arm64 | WARNING | 142 | ||
| linux-devel-x86_64 | WARNING | 150 | ||
| source / vignettes | OK | 154 | ||
| linux-release-arm64 | WARNING | 122 | ||
| linux-release-x86_64 | WARNING | 123 | ||
| macos-release-arm64 | WARNING | 164 | ||
| macos-release-x86_64 | WARNING | 333 | ||
| macos-oldrel-arm64 | WARNING | 274 | ||
| macos-oldrel-x86_64 | WARNING | 245 | ||
| windows-devel | WARNING | 110 | ||
| windows-release | WARNING | 116 | ||
| windows-oldrel | WARNING | 158 | ||
| wasm-release | OK | 103 |
Exports:filter.allele_agesget_hap_matrixget.allele_agesPolyTestPolyTest_InitPolyTest_ResampleSNPsread.avg_rateread.coalread.freqread.hapsread.linread.mutread.qualread.sampleread.seletimesTwo
Dependencies:clidata.tablegluelifecyclemagrittrplyrR.methodsS3R.ooR.utilsRcppreshape2rlangstringistringrvctrs
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Filter allele_ages by quality of tree | filter.allele_ages |
| Get haplotype matrix (L x N) | get_hap_matrix |
| Compile allele ages file | get.allele_ages |
| Test for evidence of polygenic selection | PolyTest |
| Initialise polygenic selection test | PolyTest_Init |
| Resample selection p-values | PolyTest_ResampleSNPs |
| Parse average rate file | read.avg_rate |
| Parse coal file | read.coal |
| Parse freq file | read.freq |
| Parse haps file | read.haps |
| Parse lin file | read.lin |
| Parse mut file | read.mut |
| Parse qual file | read.qual |
| Parse sample file | read.sample |
| Parse sele file | read.sele |
| relater | relater-package relater |
| Multiply a number by two | timesTwo |